You could equally say that including stats against them benefit those who succeeded against them.
The other angle is that runs and wickets against Bangladesh are, in the vast majority of cases, worth nothing in terms of helping your side win the match. Bangladesh haven't shown themselves to be capable of beating a test side in over 50 attempts, so it's reasonable to assume that South Africa will beat them whether AB De Villiers scores 250 or 0. In this case, why should De Villiers be penalised for scoring 0? His score, taken in isolation, is completely inconsequential, it neither helps nor hinders his team- the result is already close enough to predetermined as to make it reasonable to take it as inevitable, especially at home. So why should he be penalised for scoring 0?
Now, you could say a couple of things. Firstly, that it's not necessarily always the case, Vettori being the most obvious example. Secondly, that there are plenty of other inconsequential runs you might also want to exclude.
I'd argue that completely excluding Vettori's one-man show against Bangladesh would be unfair from a statistical perspective. You have to consider it to some extent.
As for the second part, runs that turned out to be inconsequential are a different thing from runs that were always going to be inconsequential. Bangladesh were, to all intents and purposes, always going to lose to South Africa. Not literally, but such an assumption is reasonable.
Don't take everything I say at face value, it's part of a wider point. Essentially, I'm asking, why should a player's failure against Bangladesh count against him? His failure doesn't affect his team's welfare even slightly.